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Recent news

Wednesday, Aug 10th, 2016
Moving the blog to MathCancer.org: Hi, everyone!Blogspot has been a great platform for me, but in the end, editing posts with source code and mathematics has been too much of ... [read more]

Wednesday, Feb 24th, 2016
Saving MultiCellDS data from BioFVM: Note: This is the fifth in a series of "how-to" blog posts to help new users and developers of BioFVM. IntroductionA major initiative for my lab ... [read more]

MultiCellDB is currently undergoing a major software upgrade and customizations at the USC Information Sciences Institute. After the upgrade and customizations are complete, this portal will be supplemented with the newer portal. Please see http://portals.MultiCellDS.org. The data on this static portal represent the initial MultiCellDB repository in December 2016.

Versioning Information

This static portal is current as of December 7, 2016. It will be replaced by newly indexed data on occasion. The "master" data can be accessed directly at gitlab, at:

https://gitlab.com/MultiCellDS/

Breast Pathology Collection

These 327 digital tissue snapshots were segmented from publicly-available breast pathology images (see below). Each digital snapshot includes the (de-identified) patient diagnosis (UDH: usual ductal hyperplasia, or DCIS: ductal carcinoma in situ), estrogen receptor status (ER), and if known, the histological grade.

Description:	These digital snapshots represent segmented breast pathology data from multiple public sources. They will include clinical annotations in the metadata.
Total count:	327
Maintainer:	Rishi Rawat (ORCID: 0000-0003-2977-5611)
Data source:	Dong et al., Computational Pathology to Discriminate Benign from Malignant Intraductal Proliferations of the Breast. PLoS ONE 9(12): e114885. (2014)
License:	CC-BY 4.0

Please note that as of Dec. 8, 2016, we are finalizing this dataset

MultiCellDB_ID	Diagnosis	ER status	Description and notes
MCDS_S_0000000001	UDH	N/A
MCDS_S_0000000002	UDH	N/A
MCDS_S_0000000003	UDH	N/A
MCDS_S_0000000004	DCIS	N/A
MCDS_S_0000000005	DCIS	N/A
MCDS_S_0000000006	DCIS	N/A
MCDS_S_0000000007	DCIS	N/A
MCDS_S_0000000008	DCIS	N/A
MCDS_S_0000000009	DCIS	N/A
MCDS_S_0000000010	DCIS	N/A
MCDS_S_0000000011	DCIS	N/A
MCDS_S_0000000012	DCIS	N/A
MCDS_S_0000000013	DCIS	N/A
MCDS_S_0000000014	DCIS	N/A
MCDS_S_0000000015	DCIS	N/A
MCDS_S_0000000016	DCIS	N/A
MCDS_S_0000000017	DCIS	N/A
MCDS_S_0000000018	DCIS	N/A
MCDS_S_0000000019	DCIS	N/A
MCDS_S_0000000020	DCIS	N/A
MCDS_S_0000000021	DCIS	N/A
MCDS_S_0000000022	UDH	N/A
MCDS_S_0000000023	UDH	N/A
MCDS_S_0000000024	DCIS	N/A
MCDS_S_0000000025	DCIS	N/A
MCDS_S_0000000026	UDH	N/A
MCDS_S_0000000027	UDH	N/A
MCDS_S_0000000028	UDH	N/A
MCDS_S_0000000029	UDH	N/A
MCDS_S_0000000030	UDH	N/A
MCDS_S_0000000031	UDH	N/A
MCDS_S_0000000032	UDH	N/A
MCDS_S_0000000033	UDH	N/A
MCDS_S_0000000034	UDH	N/A
MCDS_S_0000000035	UDH	N/A
MCDS_S_0000000036	UDH	N/A
MCDS_S_0000000037	UDH	N/A
MCDS_S_0000000038	UDH	N/A
MCDS_S_0000000039	UDH	N/A
MCDS_S_0000000040	UDH	N/A
MCDS_S_0000000041	DCIS	True
MCDS_S_0000000042	DCIS	True
MCDS_S_0000000043	DCIS	True
MCDS_S_0000000044	DCIS	True
MCDS_S_0000000045	DCIS	True
MCDS_S_0000000046	DCIS	True
MCDS_S_0000000047	DCIS	True
MCDS_S_0000000048	DCIS	True
MCDS_S_0000000049	DCIS	True
MCDS_S_0000000050	DCIS	True
MCDS_S_0000000051	DCIS	True
MCDS_S_0000000052	DCIS	True
MCDS_S_0000000053	DCIS	True
MCDS_S_0000000054	DCIS	True
MCDS_S_0000000055	DCIS	True
MCDS_S_0000000056	DCIS	True
MCDS_S_0000000057	DCIS	True
MCDS_S_0000000058	DCIS	True
MCDS_S_0000000059	DCIS	True
MCDS_S_0000000060	DCIS	True
MCDS_S_0000000061	UDH	N/A
MCDS_S_0000000062	UDH	N/A
MCDS_S_0000000063	UDH	N/A
MCDS_S_0000000064	UDH	N/A
MCDS_S_0000000065	UDH	N/A
MCDS_S_0000000066	UDH	N/A
MCDS_S_0000000067	DCIS	N/A
MCDS_S_0000000068	DCIS	N/A
MCDS_S_0000000069	DCIS	N/A
MCDS_S_0000000070	DCIS	N/A
MCDS_S_0000000071	DCIS	N/A
MCDS_S_0000000072	DCIS	N/A
MCDS_S_0000000073	DCIS	N/A
MCDS_S_0000000074	DCIS	N/A
MCDS_S_0000000075	DCIS	N/A
MCDS_S_0000000076	DCIS	True
MCDS_S_0000000077	DCIS	True
MCDS_S_0000000078	DCIS	True
MCDS_S_0000000079	DCIS	True
MCDS_S_0000000080	DCIS	True
MCDS_S_0000000081	DCIS	True
MCDS_S_0000000082	DCIS	True
MCDS_S_0000000083	DCIS	True
MCDS_S_0000000084	DCIS	True
MCDS_S_0000000085	DCIS	N/A
MCDS_S_0000000086	DCIS	True
MCDS_S_0000000087	DCIS	True
MCDS_S_0000000088	DCIS	True
MCDS_S_0000000089	DCIS	True
MCDS_S_0000000090	DCIS	False
MCDS_S_0000000091	DCIS	False
MCDS_S_0000000092	DCIS	False
MCDS_S_0000000093	DCIS	False
MCDS_S_0000000094	DCIS	False
MCDS_S_0000000095	DCIS	False
MCDS_S_0000000096	DCIS	False
MCDS_S_0000000097	DCIS	True
MCDS_S_0000000098	DCIS	True
MCDS_S_0000000099	DCIS	True
MCDS_S_0000000100	DCIS	True
MCDS_S_0000000101	DCIS	True
MCDS_S_0000000102	DCIS	True
MCDS_S_0000000103	DCIS	True
MCDS_S_0000000104	DCIS	True
MCDS_S_0000000105	DCIS	True
MCDS_S_0000000106	DCIS	True
MCDS_S_0000000107	DCIS	True
MCDS_S_0000000108	DCIS	True
MCDS_S_0000000109	DCIS	True
MCDS_S_0000000110	DCIS	True
MCDS_S_0000000111	UDH	N/A
MCDS_S_0000000112	UDH	N/A
MCDS_S_0000000113	UDH	N/A
MCDS_S_0000000114	UDH	N/A
MCDS_S_0000000115	UDH	N/A
MCDS_S_0000000116	UDH	N/A
MCDS_S_0000000117	DCIS	False
MCDS_S_0000000118	DCIS	False
MCDS_S_0000000119	DCIS	False
MCDS_S_0000000120	DCIS	False
MCDS_S_0000000121	UDH	N/A
MCDS_S_0000000122	UDH	N/A
MCDS_S_0000000123	UDH	N/A
MCDS_S_0000000124	DCIS	False
MCDS_S_0000000125	DCIS	False
MCDS_S_0000000126	DCIS	False
MCDS_S_0000000127	UDH	N/A
MCDS_S_0000000128	UDH	N/A
MCDS_S_0000000129	UDH	N/A
MCDS_S_0000000130	UDH	N/A
MCDS_S_0000000131	UDH	N/A
MCDS_S_0000000132	UDH	N/A
MCDS_S_0000000133	UDH	N/A
MCDS_S_0000000134	UDH	N/A
MCDS_S_0000000135	UDH	N/A
MCDS_S_0000000136	UDH	N/A
MCDS_S_0000000137	DCIS	True
MCDS_S_0000000138	DCIS	True
MCDS_S_0000000139	DCIS	True
MCDS_S_0000000140	DCIS	True
MCDS_S_0000000141	DCIS	False
MCDS_S_0000000142	DCIS	False
MCDS_S_0000000143	DCIS	False
MCDS_S_0000000144	DCIS	False
MCDS_S_0000000145	DCIS	True
MCDS_S_0000000146	DCIS	True
MCDS_S_0000000147	DCIS	True
MCDS_S_0000000148	DCIS	True
MCDS_S_0000000149	DCIS	True
MCDS_S_0000000150	DCIS	True
MCDS_S_0000000151	DCIS	False
MCDS_S_0000000152	DCIS	False
MCDS_S_0000000153	DCIS	True
MCDS_S_0000000154	DCIS	True
MCDS_S_0000000155	DCIS	False
MCDS_S_0000000156	DCIS	False
MCDS_S_0000000157	DCIS	False
MCDS_S_0000000158	DCIS	False
MCDS_S_0000000159	DCIS	False
MCDS_S_0000000160	DCIS	False
MCDS_S_0000000161	DCIS	False
MCDS_S_0000000162	DCIS	True
MCDS_S_0000000163	DCIS	True
MCDS_S_0000000164	DCIS	True
MCDS_S_0000000165	DCIS	True
MCDS_S_0000000166	DCIS	True
MCDS_S_0000000167	DCIS	True
MCDS_S_0000000168	DCIS	N/A
MCDS_S_0000000169	DCIS	N/A
MCDS_S_0000000170	DCIS	True
MCDS_S_0000000171	DCIS	True
MCDS_S_0000000172	DCIS	True
MCDS_S_0000000173	DCIS	True
MCDS_S_0000000174	DCIS	True
MCDS_S_0000000175	DCIS	True
MCDS_S_0000000176	DCIS	True
MCDS_S_0000000177	DCIS	True
MCDS_S_0000000178	DCIS	True
MCDS_S_0000000179	DCIS	True
MCDS_S_0000000180	DCIS	True
MCDS_S_0000000181	DCIS	False
MCDS_S_0000000182	DCIS	False
MCDS_S_0000000183	DCIS	True
MCDS_S_0000000184	DCIS	True
MCDS_S_0000000185	DCIS	True
MCDS_S_0000000186	DCIS	True
MCDS_S_0000000187	DCIS	True
MCDS_S_0000000188	DCIS	True
MCDS_S_0000000189	DCIS	True
MCDS_S_0000000190	DCIS	True
MCDS_S_0000000191	DCIS	True
MCDS_S_0000000192	DCIS	True
MCDS_S_0000000193	DCIS	True
MCDS_S_0000000194	DCIS	True
MCDS_S_0000000195	DCIS	True
MCDS_S_0000000196	DCIS	True
MCDS_S_0000000197	DCIS	True
MCDS_S_0000000198	DCIS	True
MCDS_S_0000000199	DCIS	True
MCDS_S_0000000200	DCIS	True
MCDS_S_0000000201	DCIS	True
MCDS_S_0000000202	DCIS	False
MCDS_S_0000000203	DCIS	False
MCDS_S_0000000204	DCIS	True
MCDS_S_0000000205	DCIS	True
MCDS_S_0000000206	DCIS	False
MCDS_S_0000000207	DCIS	False
MCDS_S_0000000208	DCIS	False
MCDS_S_0000000209	DCIS	False
MCDS_S_0000000210	DCIS	False
MCDS_S_0000000211	DCIS	False
MCDS_S_0000000212	DCIS	True
MCDS_S_0000000213	DCIS	True
MCDS_S_0000000214	DCIS	N/A
MCDS_S_0000000215	DCIS	False
MCDS_S_0000000216	DCIS	False
MCDS_S_0000000217	DCIS	False
MCDS_S_0000000218	DCIS	False
MCDS_S_0000000219	UDH	N/A
MCDS_S_0000000220	UDH	N/A
MCDS_S_0000000221	UDH	N/A
MCDS_S_0000000222	DCIS	True
MCDS_S_0000000223	DCIS	True
MCDS_S_0000000224	DCIS	True
MCDS_S_0000000225	DCIS	True
MCDS_S_0000000226	DCIS	True
MCDS_S_0000000227	DCIS	True
MCDS_S_0000000228	DCIS	False
MCDS_S_0000000229	DCIS	False
MCDS_S_0000000230	DCIS	True
MCDS_S_0000000231	DCIS	True
MCDS_S_0000000232	DCIS	True
MCDS_S_0000000233	DCIS	True
MCDS_S_0000000234	DCIS	True
MCDS_S_0000000235	DCIS	True
MCDS_S_0000000236	DCIS	True
MCDS_S_0000000237	DCIS	True
MCDS_S_0000000238	DCIS	True
MCDS_S_0000000239	DCIS	N/A
MCDS_S_0000000240	DCIS	N/A
MCDS_S_0000000241	DCIS	N/A
MCDS_S_0000000242	DCIS	N/A
MCDS_S_0000000243	DCIS	N/A
MCDS_S_0000000244	DCIS	True
MCDS_S_0000000245	DCIS	True
MCDS_S_0000000246	DCIS	True
MCDS_S_0000000247	DCIS	True
MCDS_S_0000000248	DCIS	True
MCDS_S_0000000249	DCIS	True
MCDS_S_0000000250	UDH	N/A
MCDS_S_0000000251	UDH	N/A
MCDS_S_0000000252	UDH	N/A
MCDS_S_0000000253	UDH	N/A
MCDS_S_0000000254	UDH	N/A
MCDS_S_0000000255	UDH	N/A
MCDS_S_0000000256	DCIS	True
MCDS_S_0000000257	DCIS	True
MCDS_S_0000000258	DCIS	True
MCDS_S_0000000259	DCIS	True
MCDS_S_0000000260	DCIS	True
MCDS_S_0000000261	DCIS	True
MCDS_S_0000000262	DCIS	True
MCDS_S_0000000263	DCIS	True
MCDS_S_0000000264	DCIS	True
MCDS_S_0000000265	DCIS	True
MCDS_S_0000000266	DCIS	True
MCDS_S_0000000267	DCIS	True
MCDS_S_0000000268	DCIS	True
MCDS_S_0000000269	DCIS	True
MCDS_S_0000000270	DCIS	True
MCDS_S_0000000271	DCIS	True
MCDS_S_0000000272	UDH	N/A
MCDS_S_0000000273	UDH	N/A
MCDS_S_0000000274	UDH	N/A
MCDS_S_0000000275	UDH	N/A
MCDS_S_0000000276	UDH	N/A
MCDS_S_0000000277	UDH	N/A
MCDS_S_0000000278	UDH	N/A
MCDS_S_0000000279	UDH	N/A
MCDS_S_0000000280	UDH	N/A
MCDS_S_0000000281	UDH	N/A
MCDS_S_0000000282	UDH	N/A
MCDS_S_0000000283	UDH	N/A
MCDS_S_0000000284	UDH	N/A
MCDS_S_0000000285	UDH	N/A
MCDS_S_0000000286	UDH	N/A
MCDS_S_0000000287	UDH	N/A
MCDS_S_0000000288	UDH	N/A
MCDS_S_0000000289	UDH	N/A
MCDS_S_0000000290	UDH	N/A
MCDS_S_0000000291	UDH	N/A
MCDS_S_0000000292	UDH	N/A
MCDS_S_0000000293	UDH	N/A
MCDS_S_0000000294	UDH	N/A
MCDS_S_0000000295	UDH	N/A
MCDS_S_0000000296	UDH	N/A
MCDS_S_0000000297	UDH	N/A
MCDS_S_0000000298	UDH	N/A
MCDS_S_0000000299	UDH	N/A
MCDS_S_0000000300	UDH	N/A
MCDS_S_0000000301	UDH	N/A
MCDS_S_0000000302	UDH	N/A
MCDS_S_0000000303	UDH	N/A
MCDS_S_0000000304	UDH	N/A
MCDS_S_0000000305	UDH	N/A
MCDS_S_0000000306	UDH	N/A
MCDS_S_0000000307	UDH	N/A
MCDS_S_0000000308	UDH	N/A
MCDS_S_0000000309	UDH	N/A
MCDS_S_0000000310	UDH	N/A
MCDS_S_0000000311	UDH	N/A
MCDS_S_0000000312	UDH	N/A
MCDS_S_0000000313	UDH	N/A
MCDS_S_0000000314	UDH	N/A
MCDS_S_0000000315	UDH	N/A
MCDS_S_0000000316	UDH	N/A
MCDS_S_0000000317	UDH	N/A
MCDS_S_0000000318	UDH	N/A
MCDS_S_0000000319	UDH	N/A
MCDS_S_0000000320	UDH	N/A
MCDS_S_0000000321	UDH	N/A
MCDS_S_0000000322	UDH	N/A
MCDS_S_0000000323	UDH	N/A
MCDS_S_0000000324	UDH	N/A
MCDS_S_0000000325	UDH	N/A
MCDS_S_0000000326	UDH	N/A
MCDS_S_0000000327	UDH	N/A

Supported in part by the Breast Cancer Research Foundation
Copyright © 2014-present by the MultiCellDS Project • • Site design: Paul Macklin at Indiana University