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Wednesday, Aug 10th, 2016
Moving the blog to MathCancer.org: Hi, everyone!Blogspot has been a great platform for me, but in the end, editing posts with source code and mathematics has been too much of ... [read more]

Wednesday, Feb 24th, 2016
Saving MultiCellDS data from BioFVM: Note: This is the fifth in a series of "how-to" blog posts to help new users and developers of BioFVM. IntroductionA major initiative for my lab ... [read more]

MultiCellDB : Breast Pathology Collection

MultiCellDB is currently undergoing a major software upgrade and customizations at the USC Information Sciences Institute. After the upgrade and customizations are complete, this portal will be supplemented with the newer portal. Please see http://portals.MultiCellDS.org. The data on this static portal represent the initial MultiCellDB repository in December 2016.

Versioning Information

This static portal is current as of December 7, 2016. It will be replaced by newly indexed data on occasion. The "master" data can be accessed directly at gitlab, at:

https://gitlab.com/MultiCellDS/

Breast Pathology Collection

These 327 digital tissue snapshots were segmented from publicly-available breast pathology images (see below). Each digital snapshot includes the (de-identified) patient diagnosis (UDH: usual ductal hyperplasia, or DCIS: ductal carcinoma in situ), estrogen receptor status (ER), and if known, the histological grade.

Description: These digital snapshots represent segmented breast pathology data from multiple public sources. They will include clinical annotations in the metadata.
Total count: 327
Maintainer: Rishi Rawat (ORCID: 0000-0003-2977-5611)
Data source: Dong et al., Computational Pathology to Discriminate Benign from Malignant Intraductal Proliferations of the Breast. PLoS ONE 9(12): e114885. (2014)
License: CC-BY 4.0

Please note that as of Dec. 8, 2016, we are finalizing this dataset

MultiCellDB_ID Diagnosis ER status Description and notes
MCDS_S_0000000001 UDH N/A
MCDS_S_0000000002 UDH N/A
MCDS_S_0000000003 UDH N/A
MCDS_S_0000000004 DCIS N/A
MCDS_S_0000000005 DCIS N/A
MCDS_S_0000000006 DCIS N/A
MCDS_S_0000000007 DCIS N/A
MCDS_S_0000000008 DCIS N/A
MCDS_S_0000000009 DCIS N/A
MCDS_S_0000000010 DCIS N/A
MCDS_S_0000000011 DCIS N/A
MCDS_S_0000000012 DCIS N/A
MCDS_S_0000000013 DCIS N/A
MCDS_S_0000000014 DCIS N/A
MCDS_S_0000000015 DCIS N/A
MCDS_S_0000000016 DCIS N/A
MCDS_S_0000000017 DCIS N/A
MCDS_S_0000000018 DCIS N/A
MCDS_S_0000000019 DCIS N/A
MCDS_S_0000000020 DCIS N/A
MCDS_S_0000000021 DCIS N/A
MCDS_S_0000000022 UDH N/A
MCDS_S_0000000023 UDH N/A
MCDS_S_0000000024 DCIS N/A
MCDS_S_0000000025 DCIS N/A
MCDS_S_0000000026 UDH N/A
MCDS_S_0000000027 UDH N/A
MCDS_S_0000000028 UDH N/A
MCDS_S_0000000029 UDH N/A
MCDS_S_0000000030 UDH N/A
MCDS_S_0000000031 UDH N/A
MCDS_S_0000000032 UDH N/A
MCDS_S_0000000033 UDH N/A
MCDS_S_0000000034 UDH N/A
MCDS_S_0000000035 UDH N/A
MCDS_S_0000000036 UDH N/A
MCDS_S_0000000037 UDH N/A
MCDS_S_0000000038 UDH N/A
MCDS_S_0000000039 UDH N/A
MCDS_S_0000000040 UDH N/A
MCDS_S_0000000041 DCIS True
MCDS_S_0000000042 DCIS True
MCDS_S_0000000043 DCIS True
MCDS_S_0000000044 DCIS True
MCDS_S_0000000045 DCIS True
MCDS_S_0000000046 DCIS True
MCDS_S_0000000047 DCIS True
MCDS_S_0000000048 DCIS True
MCDS_S_0000000049 DCIS True
MCDS_S_0000000050 DCIS True
MCDS_S_0000000051 DCIS True
MCDS_S_0000000052 DCIS True
MCDS_S_0000000053 DCIS True
MCDS_S_0000000054 DCIS True
MCDS_S_0000000055 DCIS True
MCDS_S_0000000056 DCIS True
MCDS_S_0000000057 DCIS True
MCDS_S_0000000058 DCIS True
MCDS_S_0000000059 DCIS True
MCDS_S_0000000060 DCIS True
MCDS_S_0000000061 UDH N/A
MCDS_S_0000000062 UDH N/A
MCDS_S_0000000063 UDH N/A
MCDS_S_0000000064 UDH N/A
MCDS_S_0000000065 UDH N/A
MCDS_S_0000000066 UDH N/A
MCDS_S_0000000067 DCIS N/A
MCDS_S_0000000068 DCIS N/A
MCDS_S_0000000069 DCIS N/A
MCDS_S_0000000070 DCIS N/A
MCDS_S_0000000071 DCIS N/A
MCDS_S_0000000072 DCIS N/A
MCDS_S_0000000073 DCIS N/A
MCDS_S_0000000074 DCIS N/A
MCDS_S_0000000075 DCIS N/A
MCDS_S_0000000076 DCIS True
MCDS_S_0000000077 DCIS True
MCDS_S_0000000078 DCIS True
MCDS_S_0000000079 DCIS True
MCDS_S_0000000080 DCIS True
MCDS_S_0000000081 DCIS True
MCDS_S_0000000082 DCIS True
MCDS_S_0000000083 DCIS True
MCDS_S_0000000084 DCIS True
MCDS_S_0000000085 DCIS N/A
MCDS_S_0000000086 DCIS True
MCDS_S_0000000087 DCIS True
MCDS_S_0000000088 DCIS True
MCDS_S_0000000089 DCIS True
MCDS_S_0000000090 DCIS False
MCDS_S_0000000091 DCIS False
MCDS_S_0000000092 DCIS False
MCDS_S_0000000093 DCIS False
MCDS_S_0000000094 DCIS False
MCDS_S_0000000095 DCIS False
MCDS_S_0000000096 DCIS False
MCDS_S_0000000097 DCIS True
MCDS_S_0000000098 DCIS True
MCDS_S_0000000099 DCIS True
MCDS_S_0000000100 DCIS True
MCDS_S_0000000101 DCIS True
MCDS_S_0000000102 DCIS True
MCDS_S_0000000103 DCIS True
MCDS_S_0000000104 DCIS True
MCDS_S_0000000105 DCIS True
MCDS_S_0000000106 DCIS True
MCDS_S_0000000107 DCIS True
MCDS_S_0000000108 DCIS True
MCDS_S_0000000109 DCIS True
MCDS_S_0000000110 DCIS True
MCDS_S_0000000111 UDH N/A
MCDS_S_0000000112 UDH N/A
MCDS_S_0000000113 UDH N/A
MCDS_S_0000000114 UDH N/A
MCDS_S_0000000115 UDH N/A
MCDS_S_0000000116 UDH N/A
MCDS_S_0000000117 DCIS False
MCDS_S_0000000118 DCIS False
MCDS_S_0000000119 DCIS False
MCDS_S_0000000120 DCIS False
MCDS_S_0000000121 UDH N/A
MCDS_S_0000000122 UDH N/A
MCDS_S_0000000123 UDH N/A
MCDS_S_0000000124 DCIS False
MCDS_S_0000000125 DCIS False
MCDS_S_0000000126 DCIS False
MCDS_S_0000000127 UDH N/A
MCDS_S_0000000128 UDH N/A
MCDS_S_0000000129 UDH N/A
MCDS_S_0000000130 UDH N/A
MCDS_S_0000000131 UDH N/A
MCDS_S_0000000132 UDH N/A
MCDS_S_0000000133 UDH N/A
MCDS_S_0000000134 UDH N/A
MCDS_S_0000000135 UDH N/A
MCDS_S_0000000136 UDH N/A
MCDS_S_0000000137 DCIS True
MCDS_S_0000000138 DCIS True
MCDS_S_0000000139 DCIS True
MCDS_S_0000000140 DCIS True
MCDS_S_0000000141 DCIS False
MCDS_S_0000000142 DCIS False
MCDS_S_0000000143 DCIS False
MCDS_S_0000000144 DCIS False
MCDS_S_0000000145 DCIS True
MCDS_S_0000000146 DCIS True
MCDS_S_0000000147 DCIS True
MCDS_S_0000000148 DCIS True
MCDS_S_0000000149 DCIS True
MCDS_S_0000000150 DCIS True
MCDS_S_0000000151 DCIS False
MCDS_S_0000000152 DCIS False
MCDS_S_0000000153 DCIS True
MCDS_S_0000000154 DCIS True
MCDS_S_0000000155 DCIS False
MCDS_S_0000000156 DCIS False
MCDS_S_0000000157 DCIS False
MCDS_S_0000000158 DCIS False
MCDS_S_0000000159 DCIS False
MCDS_S_0000000160 DCIS False
MCDS_S_0000000161 DCIS False
MCDS_S_0000000162 DCIS True
MCDS_S_0000000163 DCIS True
MCDS_S_0000000164 DCIS True
MCDS_S_0000000165 DCIS True
MCDS_S_0000000166 DCIS True
MCDS_S_0000000167 DCIS True
MCDS_S_0000000168 DCIS N/A
MCDS_S_0000000169 DCIS N/A
MCDS_S_0000000170 DCIS True
MCDS_S_0000000171 DCIS True
MCDS_S_0000000172 DCIS True
MCDS_S_0000000173 DCIS True
MCDS_S_0000000174 DCIS True
MCDS_S_0000000175 DCIS True
MCDS_S_0000000176 DCIS True
MCDS_S_0000000177 DCIS True
MCDS_S_0000000178 DCIS True
MCDS_S_0000000179 DCIS True
MCDS_S_0000000180 DCIS True
MCDS_S_0000000181 DCIS False
MCDS_S_0000000182 DCIS False
MCDS_S_0000000183 DCIS True
MCDS_S_0000000184 DCIS True
MCDS_S_0000000185 DCIS True
MCDS_S_0000000186 DCIS True
MCDS_S_0000000187 DCIS True
MCDS_S_0000000188 DCIS True
MCDS_S_0000000189 DCIS True
MCDS_S_0000000190 DCIS True
MCDS_S_0000000191 DCIS True
MCDS_S_0000000192 DCIS True
MCDS_S_0000000193 DCIS True
MCDS_S_0000000194 DCIS True
MCDS_S_0000000195 DCIS True
MCDS_S_0000000196 DCIS True
MCDS_S_0000000197 DCIS True
MCDS_S_0000000198 DCIS True
MCDS_S_0000000199 DCIS True
MCDS_S_0000000200 DCIS True
MCDS_S_0000000201 DCIS True
MCDS_S_0000000202 DCIS False
MCDS_S_0000000203 DCIS False
MCDS_S_0000000204 DCIS True
MCDS_S_0000000205 DCIS True
MCDS_S_0000000206 DCIS False
MCDS_S_0000000207 DCIS False
MCDS_S_0000000208 DCIS False
MCDS_S_0000000209 DCIS False
MCDS_S_0000000210 DCIS False
MCDS_S_0000000211 DCIS False
MCDS_S_0000000212 DCIS True
MCDS_S_0000000213 DCIS True
MCDS_S_0000000214 DCIS N/A
MCDS_S_0000000215 DCIS False
MCDS_S_0000000216 DCIS False
MCDS_S_0000000217 DCIS False
MCDS_S_0000000218 DCIS False
MCDS_S_0000000219 UDH N/A
MCDS_S_0000000220 UDH N/A
MCDS_S_0000000221 UDH N/A
MCDS_S_0000000222 DCIS True
MCDS_S_0000000223 DCIS True
MCDS_S_0000000224 DCIS True
MCDS_S_0000000225 DCIS True
MCDS_S_0000000226 DCIS True
MCDS_S_0000000227 DCIS True
MCDS_S_0000000228 DCIS False
MCDS_S_0000000229 DCIS False
MCDS_S_0000000230 DCIS True
MCDS_S_0000000231 DCIS True
MCDS_S_0000000232 DCIS True
MCDS_S_0000000233 DCIS True
MCDS_S_0000000234 DCIS True
MCDS_S_0000000235 DCIS True
MCDS_S_0000000236 DCIS True
MCDS_S_0000000237 DCIS True
MCDS_S_0000000238 DCIS True
MCDS_S_0000000239 DCIS N/A
MCDS_S_0000000240 DCIS N/A
MCDS_S_0000000241 DCIS N/A
MCDS_S_0000000242 DCIS N/A
MCDS_S_0000000243 DCIS N/A
MCDS_S_0000000244 DCIS True
MCDS_S_0000000245 DCIS True
MCDS_S_0000000246 DCIS True
MCDS_S_0000000247 DCIS True
MCDS_S_0000000248 DCIS True
MCDS_S_0000000249 DCIS True
MCDS_S_0000000250 UDH N/A
MCDS_S_0000000251 UDH N/A
MCDS_S_0000000252 UDH N/A
MCDS_S_0000000253 UDH N/A
MCDS_S_0000000254 UDH N/A
MCDS_S_0000000255 UDH N/A
MCDS_S_0000000256 DCIS True
MCDS_S_0000000257 DCIS True
MCDS_S_0000000258 DCIS True
MCDS_S_0000000259 DCIS True
MCDS_S_0000000260 DCIS True
MCDS_S_0000000261 DCIS True
MCDS_S_0000000262 DCIS True
MCDS_S_0000000263 DCIS True
MCDS_S_0000000264 DCIS True
MCDS_S_0000000265 DCIS True
MCDS_S_0000000266 DCIS True
MCDS_S_0000000267 DCIS True
MCDS_S_0000000268 DCIS True
MCDS_S_0000000269 DCIS True
MCDS_S_0000000270 DCIS True
MCDS_S_0000000271 DCIS True
MCDS_S_0000000272 UDH N/A
MCDS_S_0000000273 UDH N/A
MCDS_S_0000000274 UDH N/A
MCDS_S_0000000275 UDH N/A
MCDS_S_0000000276 UDH N/A
MCDS_S_0000000277 UDH N/A
MCDS_S_0000000278 UDH N/A
MCDS_S_0000000279 UDH N/A
MCDS_S_0000000280 UDH N/A
MCDS_S_0000000281 UDH N/A
MCDS_S_0000000282 UDH N/A
MCDS_S_0000000283 UDH N/A
MCDS_S_0000000284 UDH N/A
MCDS_S_0000000285 UDH N/A
MCDS_S_0000000286 UDH N/A
MCDS_S_0000000287 UDH N/A
MCDS_S_0000000288 UDH N/A
MCDS_S_0000000289 UDH N/A
MCDS_S_0000000290 UDH N/A
MCDS_S_0000000291 UDH N/A
MCDS_S_0000000292 UDH N/A
MCDS_S_0000000293 UDH N/A
MCDS_S_0000000294 UDH N/A
MCDS_S_0000000295 UDH N/A
MCDS_S_0000000296 UDH N/A
MCDS_S_0000000297 UDH N/A
MCDS_S_0000000298 UDH N/A
MCDS_S_0000000299 UDH N/A
MCDS_S_0000000300 UDH N/A
MCDS_S_0000000301 UDH N/A
MCDS_S_0000000302 UDH N/A
MCDS_S_0000000303 UDH N/A
MCDS_S_0000000304 UDH N/A
MCDS_S_0000000305 UDH N/A
MCDS_S_0000000306 UDH N/A
MCDS_S_0000000307 UDH N/A
MCDS_S_0000000308 UDH N/A
MCDS_S_0000000309 UDH N/A
MCDS_S_0000000310 UDH N/A
MCDS_S_0000000311 UDH N/A
MCDS_S_0000000312 UDH N/A
MCDS_S_0000000313 UDH N/A
MCDS_S_0000000314 UDH N/A
MCDS_S_0000000315 UDH N/A
MCDS_S_0000000316 UDH N/A
MCDS_S_0000000317 UDH N/A
MCDS_S_0000000318 UDH N/A
MCDS_S_0000000319 UDH N/A
MCDS_S_0000000320 UDH N/A
MCDS_S_0000000321 UDH N/A
MCDS_S_0000000322 UDH N/A
MCDS_S_0000000323 UDH N/A
MCDS_S_0000000324 UDH N/A
MCDS_S_0000000325 UDH N/A
MCDS_S_0000000326 UDH N/A
MCDS_S_0000000327 UDH N/A