MultiCellular Data Standard Project
The following preprints and publications either introduce or make major use of MultiCellDS:
2016
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S.H. Friedman et al. MultiCellDS: a standard and a community for sharing multicellular data.
bioRxiv 090696, 2016.
DOI: 10.1101/090696 (under consideration at PLoS Biology.)
[Download preprint at bioRxiv]
- Official release publication for MultiCellDS
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S.H. Friedman et al. MultiCellDS: a community-developed standard for curating
microenvironment-dependent multicellular data.
bioRxiv 090456, 2016. DOI: 10.1101/090456.
[Download preprint at bioRxiv]- First MultiCellDS community white paper on the data specification, including an initial repository of digital cell lines and digitized pathology
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E.F. Juarez et al. Quantifying differences in cell line population dynamics using CellPD.
BMC Sys. Biol. 10(1):1-12, 2016. DOI: 10.1186/s12918-016-0337-5.
[Free open access]- First software / publication to support MultiCellDS in an experimental workflow.
2012
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P. Macklin, M.E. Edgerton, A.M. Thompson, and V. Cristini.
Patient-calibrated agent-based modelling of ductal carcinoma in situ (DCIS): From microscopic measurements to macroscopic predictions of clinical progression.
J. Theor. Biol. 301:122-40, 2012. DOI: 10.1016/j.jtbi.2012.02.002.
[Download preprints and citation]
- First publication of MultiCellXML, along with a MultiCellXML-formatted DCIS data set.