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Wednesday, Aug 10th, 2016
Moving the blog to MathCancer.org: Hi, everyone!Blogspot has been a great platform for me, but in the end, editing posts with source code and mathematics has been too much of ... [read more]

Wednesday, Feb 24th, 2016
Saving MultiCellDS data from BioFVM: Note: This is the fifth in a series of "how-to" blog posts to help new users and developers of BioFVM. IntroductionA major initiative for my lab ... [read more]

MultiCellDB

Along with the specification and supporting software, we are developing a repository for MultiCellDS-based data called MultiCellDB. (The "DB" is for database.)

In the future, MultiCellDB will include a curated library of quality-controlled digital cell lines, starting with digital representations of breast cancer (MCF7, MCF10A, MDA-MB-231), lung cancer (HCC827, H1975), and metastatic colon cancer (HCT-116 and patient-derived lines) cell lines.

The user interface and API are under active development. You can view an early test of a synthetic dataset (digital cell line and a simulation run) at http://multicellds.org/SampleDataset.